STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC76473.1Site-specific recombinase XerD; Belongs to the 'phage' integrase family. (375 aa)    
Predicted Functional Partners:
SFC76442.1
Hypothetical protein.
       0.773
SFC76415.1
Hypothetical protein.
       0.757
SFD27363.1
Hypothetical protein.
    
  0.687
SFC58090.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.684
SFC76386.1
Helix-turn-helix domain-containing protein.
       0.526
SFC45216.1
Phage tail tape measure protein, lambda family.
  
    0.499
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
       0.461
SFC76540.1
Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB.
       0.461
SFC78442.1
comF family protein.
   
    0.420
Your Current Organism:
Tropicimonas isoalkanivorans
NCBI taxonomy Id: 441112
Other names: DSM 19548, JCM 14837, T. isoalkanivorans, Tropicimonas isoalkanivorans Harwati et al. 2009, alpha proteobacterium B51, strain B51
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.