STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC90530.1Predicted nuclease (RNAse H fold). (281 aa)    
Predicted Functional Partners:
SFC90553.1
Protein of unknown function.
       0.618
SFC91174.1
WG containing repeat-containing protein.
  
     0.617
SFC00592.1
Peptidase S24-like.
  
     0.576
SFB97959.1
Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains.
  
     0.531
SFB99374.1
AAA domain-containing protein.
  
     0.436
SFC90575.1
Hypothetical protein.
       0.436
SFC90596.1
Hypothetical protein.
 
     0.426
SFC90686.1
ATP-dependent protease ClpP, protease subunit; Belongs to the peptidase S14 family.
 
     0.417
Your Current Organism:
Tropicimonas isoalkanivorans
NCBI taxonomy Id: 441112
Other names: DSM 19548, JCM 14837, T. isoalkanivorans, Tropicimonas isoalkanivorans Harwati et al. 2009, alpha proteobacterium B51, strain B51
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.