STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC90991.1Putative phage cell wall peptidase, NlpC/P60 family. (148 aa)    
Predicted Functional Partners:
SFC90944.1
TIGR02217 family protein.
 
     0.947
SFC90968.1
Phage conserved hypothetical protein BR0599.
 
     0.947
SFC91026.1
Putative phage tail protein.
 
     0.944
SFC90920.1
Phage tail tape measure protein, lambda family.
 
    0.848
SFC91073.1
C1q domain-containing protein.
 
    0.828
SFB83523.1
Phage major tail protein, TP901-1 family.
 
     0.778
SFB98552.1
Putative phage tail protein.
 
     0.776
SFB98601.1
Phage conserved hypothetical protein BR0599.
 
     0.776
SFC01257.1
Putative phage tail protein.
 
     0.776
SFC01321.1
Phage conserved hypothetical protein BR0599.
 
     0.776
Your Current Organism:
Tropicimonas isoalkanivorans
NCBI taxonomy Id: 441112
Other names: DSM 19548, JCM 14837, T. isoalkanivorans, Tropicimonas isoalkanivorans Harwati et al. 2009, alpha proteobacterium B51, strain B51
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