STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC91123.1Peptidase M15. (109 aa)    
Predicted Functional Partners:
SFC90920.1
Phage tail tape measure protein, lambda family.
 
     0.665
SFC91073.1
C1q domain-containing protein.
 
     0.614
SFC91149.1
Hypothetical protein.
       0.605
SFC91099.1
Hypothetical protein.
       0.565
SFC91026.1
Putative phage tail protein.
       0.546
SFC90894.1
Hypothetical protein.
       0.539
SFC90944.1
TIGR02217 family protein.
       0.539
SFC90968.1
Phage conserved hypothetical protein BR0599.
       0.539
SFC90991.1
Putative phage cell wall peptidase, NlpC/P60 family.
       0.539
SFC90874.1
Hypothetical protein.
 
     0.504
Your Current Organism:
Tropicimonas isoalkanivorans
NCBI taxonomy Id: 441112
Other names: DSM 19548, JCM 14837, T. isoalkanivorans, Tropicimonas isoalkanivorans Harwati et al. 2009, alpha proteobacterium B51, strain B51
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.