STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD01226.1Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (242 aa)    
Predicted Functional Partners:
SFD01248.1
Hypothetical protein.
 
  
 0.959
SFD01270.1
Hypothetical protein.
 
   
 0.951
SFD01312.1
anti-ECFsigma factor, ChrR.
 
   
 0.896
SFD01291.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.822
SFC77375.1
Glutamate synthase (NADPH) large subunit.
    
  0.769
SFC28267.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
 
 0.650
SFC28231.1
3-oxoacyl-[acyl-carrier protein] reductase.
  
 
  0.620
SFB74831.1
Cyclopropane-fatty-acyl-phospholipid synthase.
 
     0.615
SFC21721.1
3-oxoacyl-[acyl-carrier protein] reductase.
  
 
  0.596
SFC29467.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
 
  0.580
Your Current Organism:
Tropicimonas isoalkanivorans
NCBI taxonomy Id: 441112
Other names: DSM 19548, JCM 14837, T. isoalkanivorans, Tropicimonas isoalkanivorans Harwati et al. 2009, alpha proteobacterium B51, strain B51
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