STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD02297.1Phospholipid-binding lipoprotein MlaA. (256 aa)    
Predicted Functional Partners:
SFD02314.1
Phospholipid transport system substrate-binding protein.
 
 
 
 0.983
SFB84591.1
Porin.
    
 
 0.908
SFC64460.1
Outer membrane protein OmpU.
    
 
 0.908
SFC10616.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
 
   
 0.844
SFC05152.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
 
   
 0.813
SFC05127.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
 
   
 0.805
SFD02262.1
HlyD family secretion protein.
 
     0.659
SFD02278.1
ATP-binding cassette, subfamily C.
       0.637
SFD02243.1
Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family.
       0.611
SFD02224.1
Glycerophosphoryl diester phosphodiesterase.
       0.600
Your Current Organism:
Tropicimonas isoalkanivorans
NCBI taxonomy Id: 441112
Other names: DSM 19548, JCM 14837, T. isoalkanivorans, Tropicimonas isoalkanivorans Harwati et al. 2009, alpha proteobacterium B51, strain B51
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.