STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD02614.1Glycine/D-amino acid oxidase. (348 aa)    
Predicted Functional Partners:
SFC05407.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
  
 0.976
SFC77375.1
Glutamate synthase (NADPH) large subunit.
 
 
 0.867
SFD02591.1
tRNA U34 5-methylaminomethyl-2-thiouridine-forming methyltransferase MnmC.
 
     0.749
SFC05434.1
Sarcosine oxidase subunit delta.
  
 0.744
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
 
 0.730
SFB78256.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
 0.673
SFC62453.1
Glycine/D-amino acid oxidase.
  
  
  0.655
SFD02574.1
Permease of the drug/metabolite transporter (DMT) superfamily.
       0.647
SFC05492.1
Sarcosine oxidase subunit beta.
  
  
  0.639
SFC93242.1
Hypothetical protein.
  
     0.590
Your Current Organism:
Tropicimonas isoalkanivorans
NCBI taxonomy Id: 441112
Other names: DSM 19548, JCM 14837, T. isoalkanivorans, Tropicimonas isoalkanivorans Harwati et al. 2009, alpha proteobacterium B51, strain B51
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.