STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD09111.1Autotransporter secretion inner membrane protein TamB. (1511 aa)    
Predicted Functional Partners:
SFD09094.1
Autotransporter secretion outer membrane protein TamA.
 
 
 0.998
SFC23639.1
Glycosyltransferase family 28 C-terminal domain-containing protein.
  
    0.558
bamA
Beta-barrel assembly machine subunit BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
   
 0.530
SFC72010.1
Hypothetical protein.
  
     0.500
SFD05813.1
Hypothetical protein.
 
     0.497
SFC71327.1
Hypothetical protein.
  
     0.496
SFB73735.1
DNA-binding transcriptional regulator, MarR family.
  
     0.475
SFC05716.1
Hypothetical protein.
  
     0.442
SFC51289.1
5-bromo-4-chloroindolyl phosphate hydrolysis protein.
  
     0.442
SFD05792.1
Paraquat-inducible protein B.
 
   
 0.442
Your Current Organism:
Tropicimonas isoalkanivorans
NCBI taxonomy Id: 441112
Other names: DSM 19548, JCM 14837, T. isoalkanivorans, Tropicimonas isoalkanivorans Harwati et al. 2009, alpha proteobacterium B51, strain B51
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.