STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD09624.1DNA-binding transcriptional regulator, MarR family. (160 aa)    
Predicted Functional Partners:
SFD09604.1
feruloyl-CoA synthase.
 
     0.928
SFD09588.1
Hypothetical protein.
 
     0.894
SFD09638.1
Vanillin synthase /trans-feruloyl-CoA hydratase.
 
    0.857
SFD09696.1
Tripartite ATP-independent transporter, DctQ component.
 
     0.741
SFD09658.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
  0.725
SFC28117.1
trans-feruloyl-CoA synthase.
  
     0.710
SFD09574.1
Hypothetical protein.
 
 
  0.688
SFB73012.1
Transcriptional regulator, MarR family.
  
     0.661
SFD09869.1
P-hydroxybenzoate 3-monooxygenase.
 
    0.593
SFD09720.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
     0.574
Your Current Organism:
Tropicimonas isoalkanivorans
NCBI taxonomy Id: 441112
Other names: DSM 19548, JCM 14837, T. isoalkanivorans, Tropicimonas isoalkanivorans Harwati et al. 2009, alpha proteobacterium B51, strain B51
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.