STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD09720.1TRAP-type C4-dicarboxylate transport system, substrate-binding protein. (354 aa)    
Predicted Functional Partners:
SFD09696.1
Tripartite ATP-independent transporter, DctQ component.
 
 
  0.990
SFD09673.1
TRAP transporter, DctM subunit.
 
 
  0.989
SFD09604.1
feruloyl-CoA synthase.
 
     0.642
SFD09869.1
P-hydroxybenzoate 3-monooxygenase.
 
     0.602
SFD09739.1
3-carboxy-cis,cis-muconate cycloisomerase.
       0.581
SFD09762.1
Uncharacterized conserved protein, DUF849 family.
       0.581
SFD09624.1
DNA-binding transcriptional regulator, MarR family.
 
     0.574
SFC29784.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
     0.555
SFD09638.1
Vanillin synthase /trans-feruloyl-CoA hydratase.
 
     0.534
SFC28370.1
TRAP transporter, DctM subunit.
  
    0.502
Your Current Organism:
Tropicimonas isoalkanivorans
NCBI taxonomy Id: 441112
Other names: DSM 19548, JCM 14837, T. isoalkanivorans, Tropicimonas isoalkanivorans Harwati et al. 2009, alpha proteobacterium B51, strain B51
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.