STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD13332.1DNA-binding transcriptional regulator, GntR family. (226 aa)    
Predicted Functional Partners:
SFD13353.1
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
 
     0.769
SFC39954.1
Transcriptional regulator, GntR family.
  
     0.763
SFC98836.1
DNA-binding transcriptional regulator, GntR family.
  
     0.757
SFC46745.1
Transcriptional regulator, GntR family.
  
     0.724
SFC87509.1
Transcriptional regulator, GntR family.
  
    0.719
SFC91830.1
GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex.
  
    0.706
SFD17341.1
DNA-binding transcriptional regulator, FadR family.
  
    0.706
SFC20763.1
DNA-binding transcriptional regulator, GntR family.
  
     0.682
SFD13478.1
Transcriptional regulator, GntR family.
  
     0.673
SFD13297.1
L-fucose isomerase, C-terminal domain.
 
     0.618
Your Current Organism:
Tropicimonas isoalkanivorans
NCBI taxonomy Id: 441112
Other names: DSM 19548, JCM 14837, T. isoalkanivorans, Tropicimonas isoalkanivorans Harwati et al. 2009, alpha proteobacterium B51, strain B51
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.