STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD14688.1DNA binding domain-containing protein, excisionase family. (146 aa)    
Predicted Functional Partners:
SFD14679.1
PIN domain-containing protein.
 
    0.950
SFB75358.1
PIN domain-containing protein.
 
    0.789
SFC58090.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
     
 0.781
SFD27363.1
Hypothetical protein.
     
 0.781
SFC77375.1
Glutamate synthase (NADPH) large subunit.
    
  0.776
SFD14668.1
Hypothetical protein.
       0.774
SFD27316.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.672
SFD14697.1
Hypothetical protein.
 
     0.476
SFD14709.1
Transcriptional regulator, AbiEi antitoxin, Type IV TA system.
 
     0.475
Your Current Organism:
Tropicimonas isoalkanivorans
NCBI taxonomy Id: 441112
Other names: DSM 19548, JCM 14837, T. isoalkanivorans, Tropicimonas isoalkanivorans Harwati et al. 2009, alpha proteobacterium B51, strain B51
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.