STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD20413.1Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains. (295 aa)    
Predicted Functional Partners:
SFD20434.1
Helicase conserved C-terminal domain-containing protein.
       0.779
SFD20470.1
Methyltransferase domain-containing protein.
       0.604
SFD20449.1
SNF2 family N-terminal domain-containing protein.
       0.602
SFD20497.1
Hypothetical protein.
       0.598
SFD20513.1
HNH endonuclease.
       0.575
SFC00997.1
Protein of unknown function.
 
     0.470
SFD20394.1
Hypothetical protein.
       0.439
SFC01148.1
Hypothetical protein.
 
     0.417
Your Current Organism:
Tropicimonas isoalkanivorans
NCBI taxonomy Id: 441112
Other names: DSM 19548, JCM 14837, T. isoalkanivorans, Tropicimonas isoalkanivorans Harwati et al. 2009, alpha proteobacterium B51, strain B51
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.