STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD20634.1Protein of unknown function. (358 aa)    
Predicted Functional Partners:
SFD20652.1
Putative phage tail protein.
 
 
   0.939
SFD20687.1
Phage conserved hypothetical protein BR0599.
 
 
   0.936
SFD20701.1
TIGR02217 family protein.
 
 
   0.887
SFD20671.1
Putative phage cell wall peptidase, NlpC/P60 family.
 
    0.831
SFD20719.1
Phage tail tape measure protein, lambda family.
 
    0.819
SFD20735.1
Hypothetical protein.
       0.767
SFB96465.1
Putative phage tail protein.
 
 
   0.750
SFC91026.1
Putative phage tail protein.
 
 
   0.748
SFB98552.1
Putative phage tail protein.
 
 
   0.747
SFC01257.1
Putative phage tail protein.
 
 
   0.747
Your Current Organism:
Tropicimonas isoalkanivorans
NCBI taxonomy Id: 441112
Other names: DSM 19548, JCM 14837, T. isoalkanivorans, Tropicimonas isoalkanivorans Harwati et al. 2009, alpha proteobacterium B51, strain B51
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