STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD21872.1Cytochrome c-type biogenesis protein CcmH; Possible subunit of a heme lyase. (157 aa)    
Predicted Functional Partners:
SFD21834.1
Cytochrome c-type biogenesis protein CcmF.
  
 0.980
SFD21853.1
Cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE.
  
 0.974
SFD21891.1
Cytochrome c-type biogenesis protein CcmH.
 
  
 0.963
SFB80387.1
Cytochrome c-type biogenesis protein CcmF.
  
 0.917
ccmE
Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.
 
  
 0.891
SFB86294.1
Cytochrome c-type biogenesis protein CcmF.
  
 0.888
SFC57602.1
Cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE.
  
 0.884
ccmC
Heme exporter protein C; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.
 
   
 0.823
SFC57518.1
Heme exporter protein B; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family.
 
   
 0.814
SFB95715.1
Cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE.
     0.772
Your Current Organism:
Tropicimonas isoalkanivorans
NCBI taxonomy Id: 441112
Other names: DSM 19548, JCM 14837, T. isoalkanivorans, Tropicimonas isoalkanivorans Harwati et al. 2009, alpha proteobacterium B51, strain B51
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