STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD26007.1Protein of unknown function. (129 aa)    
Predicted Functional Partners:
SFD26045.1
Antirestriction protein ArdC.
 
     0.879
SFD25990.1
Chromosome partitioning protein, ParB family.
 
     0.877
SFD25857.1
C-terminal domain on Strawberry notch homologue.
 
     0.783
SFD25878.1
Methyltransferase domain-containing protein.
 
     0.751
SFD34571.1
Hypothetical protein.
  
     0.739
SFD32828.1
Protein of unknown function.
  
     0.722
SFD32899.1
Type IV secretion system T-DNA border endonuclease VirD2.
  
     0.666
SFD25929.1
Antitoxin PrlF.
 
     0.576
SFD22916.1
Helix-turn-helix domain-containing protein.
  
     0.571
SFD26027.1
Hypothetical protein.
       0.557
Your Current Organism:
Tropicimonas isoalkanivorans
NCBI taxonomy Id: 441112
Other names: DSM 19548, JCM 14837, T. isoalkanivorans, Tropicimonas isoalkanivorans Harwati et al. 2009, alpha proteobacterium B51, strain B51
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