STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD36315.1Transcriptional regulator, LacI family. (342 aa)    
Predicted Functional Partners:
SFC87928.1
Phosphocarrier protein FPr.
   
 
 0.950
SFC77375.1
Glutamate synthase (NADPH) large subunit.
    
 
 0.903
SFB77458.1
Transcriptional regulator, LacI family.
  
     0.774
SFC11377.1
Transcriptional regulator, LacI family.
  
     0.774
SFC24287.1
Transcriptional regulator, LacI family.
  
     0.774
SFC24334.1
Transcriptional regulator, LacI family.
  
     0.774
SFC40161.1
Transcriptional regulator, LacI family.
  
     0.774
SFC86595.1
Transcriptional regulator, LacI family.
  
     0.774
SFC87735.1
Transcriptional regulator, LacI family.
  
     0.774
SFD17042.1
Transcriptional regulator, LacI family.
  
     0.772
Your Current Organism:
Tropicimonas isoalkanivorans
NCBI taxonomy Id: 441112
Other names: DSM 19548, JCM 14837, T. isoalkanivorans, Tropicimonas isoalkanivorans Harwati et al. 2009, alpha proteobacterium B51, strain B51
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.