STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO87006.1Zinc transporter, ZIP family. (257 aa)    
Predicted Functional Partners:
SFO87023.1
L-lactate dehydrogenase (cytochrome).
       0.531
SFP24215.1
Superoxide dismutase, Fe-Mn family; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
    0.486
SFP82329.1
NADPH-dependent ferric siderophore reductase, contains FAD-binding and SIP domains.
   
    0.449
SFP56108.1
Cytochrome c-type biogenesis protein.
   
    0.424
SFP84197.1
Cytochrome c-type biogenesis protein.
   
    0.424
SFQ12900.1
Cytochrome c-type biogenesis protein.
   
    0.424
SFO87041.1
Amylosucrase.
       0.416
SFP15966.1
Cation diffusion facilitator family transporter.
   
 0.404
Your Current Organism:
Tranquillimonas alkanivorans
NCBI taxonomy Id: 441119
Other names: DSM 19547, JCM 14836, T. alkanivorans, Tranquillimonas alkanivorans Harwati et al. 2008, alpha proteobacterium A34, strain A34
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