STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO94637.1Peptide/nickel transport system permease protein. (142 aa)    
Predicted Functional Partners:
SFO94615.1
Binding-protein-dependent transport system inner membrane component.
     0.992
SFO94595.1
Peptide/nickel transport system permease protein.
 
 
 0.967
SFO94580.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
  0.930
SFO94558.1
Peptide/nickel transport system substrate-binding protein.
 
  0.929
SFP92524.1
Peptide/nickel transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
 
 0.921
SFP91089.1
Peptide/nickel transport system permease protein.
 
 
 0.752
SFP92705.1
Peptide/nickel transport system permease protein.
 
 
 0.747
SFP61710.1
Dipeptide transport system permease protein.
 
 
 0.698
SFP98705.1
Peptide/nickel transport system permease protein.
 
 
 0.693
SFP41016.1
Peptide/nickel transport system permease protein.
 
 
 0.692
Your Current Organism:
Tranquillimonas alkanivorans
NCBI taxonomy Id: 441119
Other names: DSM 19547, JCM 14836, T. alkanivorans, Tranquillimonas alkanivorans Harwati et al. 2008, alpha proteobacterium A34, strain A34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.