STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO95294.1MFS transporter, BCD family, chlorophyll transporter. (426 aa)    
Predicted Functional Partners:
SFO95328.1
Geranylgeranyl reductase.
    0.999
SFO95267.1
Chlorophyll synthase.
 
  
 0.994
bchN
Ferredoxin protochlorophyllide reductase subunit N; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.
 
    0.945
SFO95576.1
Chlorophyllide a reductase subunit Y.
  
    0.903
idi
Isopentenyl-diphosphate delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
  
    0.900
SFO95190.1
Transcriptional regulator PpsR.
 
     0.897
SFO95137.1
3-vinyl bacteriochlorophyllide hydratase.
 
  
 0.889
SFO95594.1
Chlorophyllide a reductase subunit X; Belongs to the NifH/BchL/ChlL family.
  
  
 0.886
SFO94816.1
Magnesium chelatase accessory protein.
  
    0.873
SFO95619.1
3-hydroxyethyl bacteriochlorophyllide a dehydrogenase.
 
  
 0.872
Your Current Organism:
Tranquillimonas alkanivorans
NCBI taxonomy Id: 441119
Other names: DSM 19547, JCM 14836, T. alkanivorans, Tranquillimonas alkanivorans Harwati et al. 2008, alpha proteobacterium A34, strain A34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.