STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO95681.1Farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family. (293 aa)    
Predicted Functional Partners:
SFO95661.1
Demethylspheroidene O-methyltransferase.
 
 0.975
SFO95328.1
Geranylgeranyl reductase.
 
 0.964
SFO94715.1
Phytoene synthase.
 
 0.942
SFO95619.1
3-hydroxyethyl bacteriochlorophyllide a dehydrogenase.
 
 
 0.899
SFO95729.1
Hydroxyneurosporene synthase.
 
  
 0.898
SFP25769.1
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
 
 
 0.888
SFO95576.1
Chlorophyllide a reductase subunit Y.
 
     0.885
SFO95551.1
Chlorophyllide a reductase subunit Z.
 
  
 0.873
SFP54803.1
Squalene/phytoene synthase.
  
 0.866
SFP49257.1
Farnesyl-diphosphate farnesyltransferase.
  
 0.865
Your Current Organism:
Tranquillimonas alkanivorans
NCBI taxonomy Id: 441119
Other names: DSM 19547, JCM 14836, T. alkanivorans, Tranquillimonas alkanivorans Harwati et al. 2008, alpha proteobacterium A34, strain A34
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