STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO83514.1Polyhydroxyalkanoate synthesis repressor PhaR. (175 aa)    
Predicted Functional Partners:
SFO83529.1
Hypothetical protein.
 
   
 0.928
SFO83551.1
Polyhydroxyalkanoate synthase.
 
   
 0.904
SFO83571.1
Poly(3-hydroxybutyrate) depolymerase.
 
   
 0.851
fur
Fur family transcriptional regulator, iron response regulator; Belongs to the Fur family.
      
 0.615
fur-2
Manganese uptake regulator, Fur family; Belongs to the Fur family.
      
 0.615
SFQ20843.1
NTE family protein.
 
     0.513
SFP17128.1
methylmalonyl-CoA mutase.
      
 0.437
SFP81474.1
methylmalonyl-CoA epimerase /ethylmalonyl-CoA epimerase.
      
 0.437
SFP17053.1
Biotin carboxyl carrier protein /biotin carboxylase.
      
 0.412
SFP36414.1
(R)-ethylmalonyl-CoA mutase.
      
 0.412
Your Current Organism:
Tranquillimonas alkanivorans
NCBI taxonomy Id: 441119
Other names: DSM 19547, JCM 14836, T. alkanivorans, Tranquillimonas alkanivorans Harwati et al. 2008, alpha proteobacterium A34, strain A34
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.