STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP08843.1Putative acyl-CoA dehydrogenase. (531 aa)    
Predicted Functional Partners:
SFP14770.1
3-hydroxyacyl-CoA dehydrogenase.
 
 0.959
SFP72739.1
3-hydroxyacyl-CoA dehydrogenase.
 
 0.941
SFP66511.1
Short chain enoyl-CoA hydratase.
  
 0.933
SFP67040.1
3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.933
SFO82568.1
Electron transfer flavoprotein alpha subunit apoprotein.
 
 0.916
SFO82589.1
Electron transfer flavoprotein beta subunit.
  
 
 0.891
SFO85579.1
NAD-dependent formate dehydrogenase flavoprotein subunit.
   
 
 0.774
SFP17128.1
methylmalonyl-CoA mutase.
  
 
 0.707
SFP36414.1
(R)-ethylmalonyl-CoA mutase.
  
 
 0.707
SFP50496.1
L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
     
 0.702
Your Current Organism:
Tranquillimonas alkanivorans
NCBI taxonomy Id: 441119
Other names: DSM 19547, JCM 14836, T. alkanivorans, Tranquillimonas alkanivorans Harwati et al. 2008, alpha proteobacterium A34, strain A34
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