STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP18447.1TRAP-type C4-dicarboxylate transport system, small permease component. (171 aa)    
Predicted Functional Partners:
SFP18424.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
    0.954
SFP18470.1
TRAP transporter, DctM subunit.
 
  0.932
SFP18401.1
Aminomethyltransferase; Belongs to the GcvT family.
 
     0.894
SFP40132.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.803
SFP51788.1
vanillate/3-O-methylgallate O-demethylase; Belongs to the GcvT family.
 
     0.737
SFP40162.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
     0.724
SFP40183.1
TRAP transporter, DctM subunit.
  
  0.650
SFP40644.1
Hypothetical protein.
  
     0.647
SFP18492.1
PAS domain S-box-containing protein.
       0.601
SFP40742.1
Aminocarboxymuconate-semialdehyde decarboxylase.
  
     0.571
Your Current Organism:
Tranquillimonas alkanivorans
NCBI taxonomy Id: 441119
Other names: DSM 19547, JCM 14836, T. alkanivorans, Tranquillimonas alkanivorans Harwati et al. 2008, alpha proteobacterium A34, strain A34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.