STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP19899.15-bromo-4-chloroindolyl phosphate hydrolysis protein. (285 aa)    
Predicted Functional Partners:
SFP19884.1
Uncharacterized conserved protein YaaN involved in tellurite resistance; Belongs to the TelA family.
 
  
 0.994
SFP19865.1
Protein of unknown function.
 
     0.939
SFP19955.1
23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family.
     
 0.796
SFP19919.1
Hypothetical protein.
       0.773
SFO89452.1
Hypothetical protein.
  
     0.730
SFO83529.1
Hypothetical protein.
  
     0.701
SFP25179.1
Hypothetical protein.
  
     0.699
SFP09856.1
RDD family protein.
 
     0.682
SFP19937.1
Membrane protein TerC, possibly involved in tellurium resistance.
       0.636
SFP54508.1
Sporulation related domain-containing protein.
  
     0.607
Your Current Organism:
Tranquillimonas alkanivorans
NCBI taxonomy Id: 441119
Other names: DSM 19547, JCM 14836, T. alkanivorans, Tranquillimonas alkanivorans Harwati et al. 2008, alpha proteobacterium A34, strain A34
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