STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP15472.1Conserved hypothetical protein. (149 aa)    
Predicted Functional Partners:
SFO87937.1
Ubiquinone biosynthesis protein COQ9.
    
 0.941
SFP51429.1
tRNA (mo5U34)-methyltransferase.
  
 0.585
SFP15419.1
Tungstate transport system ATP-binding protein.
 
     0.515
SFP84653.1
Zinc transporter, ZIP family.
  
     0.502
SFP15502.1
Response regulator receiver domain-containing protein.
       0.499
SFP15526.1
PAS domain S-box-containing protein.
       0.499
SFP80132.1
Uncharacterized conserved protein, DUF2267 family.
  
     0.442
SFP15448.1
Tungstate transport system permease protein.
       0.440
SFP95272.1
Hypothetical protein.
  
     0.427
SFQ08383.1
Hypothetical protein.
  
     0.421
Your Current Organism:
Tranquillimonas alkanivorans
NCBI taxonomy Id: 441119
Other names: DSM 19547, JCM 14836, T. alkanivorans, Tranquillimonas alkanivorans Harwati et al. 2008, alpha proteobacterium A34, strain A34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.