STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP23401.1Hypothetical protein. (405 aa)    
Predicted Functional Partners:
SFP23374.1
MoxR-like ATPase.
 
     0.964
SFP23454.1
Carbon-monoxide dehydrogenase large subunit.
 
     0.883
SFP23483.1
Carbon-monoxide dehydrogenase medium subunit.
 
     0.883
SFP16868.1
Hypothetical protein.
 
     0.814
SFP53789.1
Carbon-monoxide dehydrogenase medium subunit.
 
     0.791
SFP53840.1
Molybdenum cofactor cytidylyltransferase.
 
     0.785
SFP07033.1
Carbon-monoxide dehydrogenase large subunit.
 
     0.775
SFP23431.1
Carbon-monoxide dehydrogenase small subunit.
 
     0.610
SFP53860.1
Xanthine dehydrogenase accessory factor.
 
     0.552
SFP23361.1
Transcriptional regulator, AraC family.
       0.506
Your Current Organism:
Tranquillimonas alkanivorans
NCBI taxonomy Id: 441119
Other names: DSM 19547, JCM 14836, T. alkanivorans, Tranquillimonas alkanivorans Harwati et al. 2008, alpha proteobacterium A34, strain A34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.