STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP26725.1Protein CcmA, bactofilin family. (173 aa)    
Predicted Functional Partners:
SFP26747.1
Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain.
 
   
 0.892
SFP08279.1
Rod shape-determining protein MreC.
 
     0.639
SFP80479.1
Hypothetical protein.
  
     0.602
SFP41231.1
Cholesterol transport system auxiliary component.
   
    0.597
SFP17837.1
Hypothetical protein.
  
     0.570
trpD
Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).
   
    0.563
SFP08237.1
Penicillin-binding protein 2.
 
     0.561
SFP06955.1
Hypothetical protein.
  
     0.555
mrdB
Cell elongation-specific peptidoglycan biosynthesis regulator RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 
     0.503
SFP08304.1
Rod shape-determining protein MreB.
 
   
 0.485
Your Current Organism:
Tranquillimonas alkanivorans
NCBI taxonomy Id: 441119
Other names: DSM 19547, JCM 14836, T. alkanivorans, Tranquillimonas alkanivorans Harwati et al. 2008, alpha proteobacterium A34, strain A34
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