STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP24805.1Protein of unknown function. (119 aa)    
Predicted Functional Partners:
SFP24781.1
Uncharacterized protein family UPF0029.
       0.773
SFP24828.1
Putative SOS response-associated peptidase YedK; Belongs to the SOS response-associated peptidase family.
       0.773
SFP24755.1
Transcriptional regulator, LacI family.
       0.581
SFP24857.1
Protein of unknwon function.
       0.566
SFP24883.1
Response regulator receiver domain-containing protein.
       0.566
SFP50285.1
Trypsin-like peptidase domain-containing protein.
  
     0.426
SFP24655.1
Monosaccharide ABC transporter membrane protein, CUT2 family; Belongs to the binding-protein-dependent transport system permease family.
       0.402
SFP24682.1
Monosaccharide ABC transporter ATP-binding protein, CUT2 family.
       0.402
SFP24708.1
Oxidoreductase family, C-terminal alpha/beta domain.
       0.402
SFP24731.1
Sugar phosphate isomerase/epimerase.
       0.402
Your Current Organism:
Tranquillimonas alkanivorans
NCBI taxonomy Id: 441119
Other names: DSM 19547, JCM 14836, T. alkanivorans, Tranquillimonas alkanivorans Harwati et al. 2008, alpha proteobacterium A34, strain A34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.