STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP31333.1Ankyrin repeat-containing protein. (304 aa)    
Predicted Functional Partners:
SFO85579.1
NAD-dependent formate dehydrogenase flavoprotein subunit.
 
 
 0.999
SFO84935.1
WD-40 repeat-containing protein.
  
 
 0.991
SFP75600.1
ATP-dependent helicase HrpB.
    
 0.972
SFP03392.1
Ca2+-binding protein, EF-hand superfamily.
    
 0.960
SFP15839.1
EF hand.
    
 0.960
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
 0.960
rpsC
SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
    
 0.960
SFQ02361.1
EF hand.
    
 0.960
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 
 0.957
SFP94411.1
Sulfate permease, SulP family.
    
 0.955
Your Current Organism:
Tranquillimonas alkanivorans
NCBI taxonomy Id: 441119
Other names: DSM 19547, JCM 14836, T. alkanivorans, Tranquillimonas alkanivorans Harwati et al. 2008, alpha proteobacterium A34, strain A34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.