STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP31751.1Endonuclease/Exonuclease/phosphatase family protein. (310 aa)    
Predicted Functional Partners:
SFO90321.1
Selenocysteine lyase/Cysteine desulfurase.
    
   0.772
SFP55731.1
Cysteine desulfurase family protein, VC1184 subfamily.
    
   0.772
SFP60863.1
Cysteine desulfurase / selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
    
   0.772
SFP95064.1
Cysteine desulfurase family protein, VC1184 subfamily.
    
   0.772
SFP96389.1
Selenocysteine lyase/Cysteine desulfurase.
    
   0.772
SFQ19743.1
Selenocysteine lyase/Cysteine desulfurase.
    
   0.772
SFP64785.1
Maltose alpha-D-glucosyltransferase/ alpha-amylase.
  
 
  0.720
leuB
3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.
       0.708
SFP57489.1
Hypothetical glycoside hydrolase 5.
  
 
  0.664
SFP31770.1
Hypothetical protein.
       0.659
Your Current Organism:
Tranquillimonas alkanivorans
NCBI taxonomy Id: 441119
Other names: DSM 19547, JCM 14836, T. alkanivorans, Tranquillimonas alkanivorans Harwati et al. 2008, alpha proteobacterium A34, strain A34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.