STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP31919.1Autotransporter secretion inner membrane protein TamB. (1595 aa)    
Predicted Functional Partners:
SFP31899.1
Autotransporter secretion outer membrane protein TamA.
 
 
 0.999
SFP31938.1
Hypothetical protein.
       0.613
SFP31876.1
Formate/nitrite transporter FocA, FNT family.
       0.587
SFP18126.1
Acyl-CoA reductase.
   
    0.474
SFP25179.1
Hypothetical protein.
  
     0.454
SFP81357.1
Hypothetical protein.
  
     0.454
bamA
Beta-barrel assembly machine subunit BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
     
 0.445
SFP19865.1
Protein of unknown function.
  
     0.441
SFP31853.1
Rho termination factor, N-terminal domain.
       0.424
SFP27379.1
Protein of unknown function.
  
     0.412
Your Current Organism:
Tranquillimonas alkanivorans
NCBI taxonomy Id: 441119
Other names: DSM 19547, JCM 14836, T. alkanivorans, Tranquillimonas alkanivorans Harwati et al. 2008, alpha proteobacterium A34, strain A34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.