STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP43385.1Predicted dehydrogenase. (365 aa)    
Predicted Functional Partners:
aroQ
3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
 
     0.801
SFP03687.1
4-hydroxyphenylpyruvate dioxygenase.
 
 
 0.791
SFP43358.1
2,4-dihydroxyhept-2-enedioate aldolase; Belongs to the HpcH/HpaI aldolase family.
       0.774
SFP89277.1
NADH dehydrogenase.
   
 
  0.680
SFP91355.1
Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains.
   
 
  0.680
SFP26493.1
Predicted dehydrogenase.
  
  
 
0.652
SFQ12125.1
Hypothetical protein.
  
 
 0.606
SFP24731.1
Sugar phosphate isomerase/epimerase.
  
 
 0.600
SFO92947.1
UDP-N-acetylglucosamine 2-epimerase (hydrolysing).
  
 
 0.569
SFQ11132.1
Hypothetical protein.
  
 
  0.554
Your Current Organism:
Tranquillimonas alkanivorans
NCBI taxonomy Id: 441119
Other names: DSM 19547, JCM 14836, T. alkanivorans, Tranquillimonas alkanivorans Harwati et al. 2008, alpha proteobacterium A34, strain A34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.