STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP43702.1Carboxymuconolactone decarboxylase family protein. (188 aa)    
Predicted Functional Partners:
SFO86648.1
3-oxoadipate enol-lactonase.
   
 
  0.929
SFO86772.1
3-carboxy-cis,cis-muconate cycloisomerase.
     
  0.926
SFO86685.1
4-carboxymuconolactone decarboxylase.
    
 0.872
SFP41797.1
4-carboxymuconolactone decarboxylase.
    
 0.848
SFP43678.1
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.817
SFQ08096.1
Cupin domain protein.
  
 
  0.582
SFP43729.1
Hypothetical protein.
       0.580
SFP43654.1
Signal transduction histidine kinase.
       0.509
SFP04497.1
Uncharacterized membrane protein.
  
     0.474
SFP56929.1
Carboxylate-amine ligase; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.
   
    0.467
Your Current Organism:
Tranquillimonas alkanivorans
NCBI taxonomy Id: 441119
Other names: DSM 19547, JCM 14836, T. alkanivorans, Tranquillimonas alkanivorans Harwati et al. 2008, alpha proteobacterium A34, strain A34
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