STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP40237.1D-galactarolactone cycloisomerase. (378 aa)    
Predicted Functional Partners:
SFP40208.1
D-galactarolactone isomerase.
 
  
 0.943
SFP40264.1
5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family.
 
  
  0.895
SFP40283.1
Transcriptional regulator, GntR family.
 
     0.689
SFP15273.1
2-keto-3-deoxygalactonate kinase.
 
 0.614
SFP43972.1
Altronate hydrolase.
 
  
 0.560
SFQ07746.1
L-fuconolactonase.
 
  
  0.522
SFQ08612.1
L-alanine-DL-glutamate epimerase.
 
  
 
0.493
SFQ07898.1
L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
 
0.483
SFP44482.1
2-pyrone-4,6-dicarboxylate lactonase.
 
  
 0.482
SFP50905.1
Predicted metal-dependent hydrolase, TIM-barrel fold.
 
  
 0.482
Your Current Organism:
Tranquillimonas alkanivorans
NCBI taxonomy Id: 441119
Other names: DSM 19547, JCM 14836, T. alkanivorans, Tranquillimonas alkanivorans Harwati et al. 2008, alpha proteobacterium A34, strain A34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.