STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP39585.1TRAP-type C4-dicarboxylate transport system, small permease component. (164 aa)    
Predicted Functional Partners:
SFP39606.1
C4-dicarboxylate transporter, DctM subunit.
 
  0.995
SFP39561.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
 
  0.991
SFP39454.1
Protein of unknown function.
 
     0.826
SFP39525.1
Transcriptional regulator, IclR family.
 
     0.785
SFP39627.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
     0.752
SFQ07083.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
  
  0.752
SFP39500.1
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
     0.653
SFP39478.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
 
     0.642
SFP31437.1
Tripartite ATP-independent transporter solute receptor, DctP family.
  
    0.612
SFP31419.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
     0.557
Your Current Organism:
Tranquillimonas alkanivorans
NCBI taxonomy Id: 441119
Other names: DSM 19547, JCM 14836, T. alkanivorans, Tranquillimonas alkanivorans Harwati et al. 2008, alpha proteobacterium A34, strain A34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.