STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP47634.1Spermidine/putrescine transport system permease protein. (302 aa)    
Predicted Functional Partners:
SFP47604.1
Spermidine/putrescine transport system permease protein.
 
0.999
SFP67510.1
Putative spermidine/putrescine transport system permease protein.
 
0.991
SFP47574.1
Spermidine/putrescine transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 0.990
SFP55908.1
Spermidine/putrescine transport system substrate-binding protein.
 
 
 0.970
SFQ08889.1
Putative spermidine/putrescine transport system permease protein.
 
 0.947
potA
Putative spermidine/putrescine transport system ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 0.925
SFP20014.1
iron(III) transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 0.881
SFP67549.1
Putative spermidine/putrescine transport system substrate-binding protein.
  
 
 0.871
SFQ08953.1
Extracellular solute-binding protein.
  
 
 0.871
SFP47660.1
Hypothetical protein.
       0.523
Your Current Organism:
Tranquillimonas alkanivorans
NCBI taxonomy Id: 441119
Other names: DSM 19547, JCM 14836, T. alkanivorans, Tranquillimonas alkanivorans Harwati et al. 2008, alpha proteobacterium A34, strain A34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.