STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP60658.1Transcriptional regulator, BadM/Rrf2 family. (153 aa)    
Predicted Functional Partners:
SFP60680.1
Cysteine desulfurase.
 
 0.996
SFP48077.1
NifU homolog involved in Fe-S cluster formation.
  
  
 0.952
SFP10549.1
Iron-binding apoprotein IscA; Belongs to the HesB/IscA family.
 
  
 0.884
SFP60702.1
Iron-regulated ABC transporter membrane component SufB.
     
 0.806
SFP60628.1
Hypothetical protein.
       0.692
SFP60729.1
Uncharacterized conserved protein YbjQ, UPF0145 family; Belongs to the UPF0145 family.
     
 0.685
SFP60809.1
Yip1 domain-containing protein.
     
 0.668
SFP60783.1
Fe-S cluster assembly protein SufD.
     
 0.658
SFP60836.1
Yip1 domain-containing protein.
     
 0.650
SFP60757.1
Fe-S cluster assembly ATP-binding protein.
     
 0.634
Your Current Organism:
Tranquillimonas alkanivorans
NCBI taxonomy Id: 441119
Other names: DSM 19547, JCM 14836, T. alkanivorans, Tranquillimonas alkanivorans Harwati et al. 2008, alpha proteobacterium A34, strain A34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.