STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP61055.1D-ribulokinase. (545 aa)    
Predicted Functional Partners:
SFP61033.1
Ribitol 2-dehydrogenase.
 
  
  0.992
SFP76488.1
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
   
 0.905
SFP43087.1
2-keto-3-deoxygluconate kinase.
     
 0.866
SFP16310.1
Ribulose-5-phosphate 4-epimerase/Fuculose-1-phosphate aldolase.
 
 
 0.863
SFP42086.1
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
    
 0.828
SFP61006.1
D-xylose transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
     0.811
SFP60980.1
Monosaccharide ABC transporter ATP-binding protein, CUT2 family.
 
    0.807
xylB
Xylulokinase.
 
 
0.777
SFP60952.1
Monosaccharide ABC transporter substrate-binding protein, CUT2 family.
 
     0.762
SFP60926.1
Transcriptional regulator, LacI family.
 
   
 0.708
Your Current Organism:
Tranquillimonas alkanivorans
NCBI taxonomy Id: 441119
Other names: DSM 19547, JCM 14836, T. alkanivorans, Tranquillimonas alkanivorans Harwati et al. 2008, alpha proteobacterium A34, strain A34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.