STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP71512.1Capsular polysaccharide export protein. (692 aa)    
Predicted Functional Partners:
SFP71491.1
Polysaccharide export outer membrane protein.
 
  
 0.986
SFP08037.1
Capsular polysaccharide transport system permease protein.
 
  
 0.976
SFP08066.1
Capsular polysaccharide transport system ATP-binding protein.
 
  
 0.976
SFO94192.1
ABC-type polysaccharide/polyol phosphate export permease.
 
  
 0.975
SFP71471.1
Capsular polysaccharide export protein.
   
 0.961
SFO84080.1
Polysaccharide export outer membrane protein.
 
  
 0.887
SFQ09798.1
Polysaccharide export outer membrane protein.
  
  
 0.780
SFO94063.1
Glycosyl transferase family 2.
 
    0.768
SFO94088.1
Glycosyl transferase family 2.
 
    0.763
SFO94038.1
Core-2/I-Branching enzyme.
  
     0.759
Your Current Organism:
Tranquillimonas alkanivorans
NCBI taxonomy Id: 441119
Other names: DSM 19547, JCM 14836, T. alkanivorans, Tranquillimonas alkanivorans Harwati et al. 2008, alpha proteobacterium A34, strain A34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.