STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP78328.1TRAP-type mannitol/chloroaromatic compound transport system, small permease component. (170 aa)    
Predicted Functional Partners:
SFP78306.1
TRAP transporter, DctM subunit.
 
    0.947
SFP78285.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
     0.916
SFP78348.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
     0.834
SFP78371.1
Carboxylesterase.
 
     0.744
SFP40132.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
     0.722
SFP07724.1
Putative tricarboxylic transport membrane protein.
  
     0.589
SFP18195.1
Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domains.
  
     0.544
SFP23812.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
  
     0.500
SFP23790.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
     0.498
SFP07816.1
Two-component system, OmpR family, sensor histidine kinase TctE.
  
     0.497
Your Current Organism:
Tranquillimonas alkanivorans
NCBI taxonomy Id: 441119
Other names: DSM 19547, JCM 14836, T. alkanivorans, Tranquillimonas alkanivorans Harwati et al. 2008, alpha proteobacterium A34, strain A34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.