STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP80107.1Hypothetical protein. (193 aa)    
Predicted Functional Partners:
SFO93819.1
DNA translocase FtsK.
    
 
 0.902
SFP32246.1
Carboxyl-terminal processing protease; Belongs to the peptidase S41A family.
   
   0.737
SFP86214.1
Subtilase family protein.
  
 0.663
SFO91345.1
Hypothetical protein.
  
 0.595
SFP55571.1
Subtilase family protein; Belongs to the peptidase S8 family.
  
 0.595
SFP27759.1
Acyl carrier protein.
   
   0.509
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
   0.509
SFQ20299.1
Acyl carrier protein.
   
   0.509
SFP80132.1
Uncharacterized conserved protein, DUF2267 family.
       0.507
SFP48949.1
Phage conserved hypothetical protein, phiE125 gp8 family.
  
 0.477
Your Current Organism:
Tranquillimonas alkanivorans
NCBI taxonomy Id: 441119
Other names: DSM 19547, JCM 14836, T. alkanivorans, Tranquillimonas alkanivorans Harwati et al. 2008, alpha proteobacterium A34, strain A34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.