STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP79839.1Hypothetical protein. (199 aa)    
Predicted Functional Partners:
SFP79782.1
N-terminal double-transmembrane domain-containing protein.
 
     0.862
SFP79800.1
Protein of unknown function DUF58.
 
     0.798
SFP79759.1
Hypothetical protein.
 
     0.742
SFP79823.1
MoxR-like ATPase.
       0.719
SFO96139.1
8-oxo-dGTP pyrophosphatase MutT, NUDIX family.
      0.645
SFP14902.1
acyl-CoA dehydrogenase.
  
     0.482
SFP27819.1
Uncharacterized domain 1-containing protein.
  
     0.479
SFP16335.1
Hydroxypyruvate isomerase; Belongs to the hyi family.
 
     0.429
SFP19482.1
Hypothetical protein; Belongs to the UPF0260 family.
  
     0.403
Your Current Organism:
Tranquillimonas alkanivorans
NCBI taxonomy Id: 441119
Other names: DSM 19547, JCM 14836, T. alkanivorans, Tranquillimonas alkanivorans Harwati et al. 2008, alpha proteobacterium A34, strain A34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.