STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP95101.1Transcriptional regulator, IclR family. (278 aa)    
Predicted Functional Partners:
SFP95118.1
Permease of the drug/metabolite transporter (DMT) superfamily.
 
     0.901
SFP95135.1
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit.
 
     0.855
SFP95163.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
    0.772
SFP23289.1
Transcriptional regulator, IclR family.
  
     0.607
SFP95188.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
     0.578
SFP40942.1
Transcriptional regulator, IclR family.
  
     0.550
SFP95211.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
     0.545
SFP40709.1
Transcriptional regulator, IclR family.
  
     0.540
SFP83757.1
Transcriptional regulator, IclR family.
  
     0.533
SFQ00252.1
Transcriptional regulator, IclR family.
  
     0.505
Your Current Organism:
Tranquillimonas alkanivorans
NCBI taxonomy Id: 441119
Other names: DSM 19547, JCM 14836, T. alkanivorans, Tranquillimonas alkanivorans Harwati et al. 2008, alpha proteobacterium A34, strain A34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.