STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP96289.1Ca-activated chloride channel family protein. (755 aa)    
Predicted Functional Partners:
SFO94772.1
Protoporphyrin IX magnesium-chelatase; Involved in bacteriochlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.
  
 0.966
SFP88424.1
Dimethylglycine dehydrogenase; Belongs to the GcvT family.
  
  
  0.655
SFP96306.1
Hypothetical protein.
       0.605
SFP03515.1
Reductive dehalogenase.
   
 
  0.581
SFP23258.1
Cytochrome P450.
   
 
  0.581
SFP66877.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
   
 
  0.581
SFP99075.1
Vanillate O-demethylase ferredoxin subunit.
   
 
  0.581
SFQ00355.1
Phthalate 4,5-dioxygenase, reductase subunit.
   
 
  0.581
SFO95072.1
Cobaltochelatase CobN subunit.
  
 0.523
SFP34560.1
Cobaltochelatase CobN subunit.
  
 0.523
Your Current Organism:
Tranquillimonas alkanivorans
NCBI taxonomy Id: 441119
Other names: DSM 19547, JCM 14836, T. alkanivorans, Tranquillimonas alkanivorans Harwati et al. 2008, alpha proteobacterium A34, strain A34
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