STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP97471.1H+ Antiporter protein. (439 aa)    
Predicted Functional Partners:
SFP97448.1
Hypothetical protein NreA.
 
     0.932
SFP97386.1
Hypothetical protein.
 
     0.866
SFP97425.1
Hypothetical protein.
 
     0.856
SFP97413.1
HupE / UreJ protein.
 
     0.830
SFP84569.1
Hypothetical protein.
  
     0.683
SFP65814.1
Flagellar basal-body rod protein FlgF; Belongs to the flagella basal body rod proteins family.
    
   0.585
SFQ23736.1
Metallo-beta-lactamase family protein.
   
    0.509
SFP71779.1
Homoserine dehydrogenase.
   
  0.470
SFP89358.1
Glutamate synthase (NADPH) large subunit.
      
 0.404
Your Current Organism:
Tranquillimonas alkanivorans
NCBI taxonomy Id: 441119
Other names: DSM 19547, JCM 14836, T. alkanivorans, Tranquillimonas alkanivorans Harwati et al. 2008, alpha proteobacterium A34, strain A34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.