STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ07124.13-hydroxyisobutyrate dehydrogenase. (315 aa)    
Predicted Functional Partners:
SFQ07146.1
Quinol monooxygenase YgiN.
  
    0.780
SFQ07103.1
Tripartite ATP-independent transporter solute receptor, DctP family.
       0.773
SFQ07168.1
Predicted homoserine dehydrogenase, contains C-terminal SAF domain.
       0.773
SFP57011.1
3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.
  
  
 
0.658
SFP14770.1
3-hydroxyacyl-CoA dehydrogenase.
   
 
 0.625
SFQ07062.1
TRAP transporter, DctM subunit.
       0.608
SFQ07083.1
TRAP-type C4-dicarboxylate transport system, small permease component.
       0.608
SFP56985.1
enoyl-CoA hydratase.
 
 
 
  0.604
SFP56882.1
Malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase.
   
 
  0.583
SFP66511.1
Short chain enoyl-CoA hydratase.
   
 
 0.544
Your Current Organism:
Tranquillimonas alkanivorans
NCBI taxonomy Id: 441119
Other names: DSM 19547, JCM 14836, T. alkanivorans, Tranquillimonas alkanivorans Harwati et al. 2008, alpha proteobacterium A34, strain A34
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