STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ11085.1Sel1 repeat-containing protein. (234 aa)    
Predicted Functional Partners:
SFP27400.1
Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.
   
 0.895
SFP51559.1
Hypothetical protein.
  
     0.751
SFP50496.1
L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
    
  0.720
SFP07975.1
Signal transduction histidine kinase.
    
 0.612
SFP14370.1
PAS/PAC sensor hybrid histidine kinase.
    
 0.612
SFP63136.1
Hypothetical protein.
    
 0.612
SFP65127.1
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
   0.587
SFQ11063.1
Glucose / Sorbosone dehydrogenase.
       0.557
SFQ11111.1
3-dehydroquinate synthase.
       0.541
SFQ11132.1
Hypothetical protein.
       0.541
Your Current Organism:
Tranquillimonas alkanivorans
NCBI taxonomy Id: 441119
Other names: DSM 19547, JCM 14836, T. alkanivorans, Tranquillimonas alkanivorans Harwati et al. 2008, alpha proteobacterium A34, strain A34
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.