STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ12030.1TRAP transporter, DctM subunit. (438 aa)    
Predicted Functional Partners:
SFQ11981.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
 
  0.994
SFQ12003.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
     0.941
SFQ11957.1
Transcriptional regulator, TetR family.
 
     0.828
SFQ12052.1
Kynurenine formamidase.
 
     0.803
SFQ12076.1
Uncharacterized conserved protein, DUF849 family.
       0.752
SFQ16343.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.749
SFP23790.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.733
SFP90988.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
     0.707
SFP23812.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
  
     0.706
SFP18424.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.686
Your Current Organism:
Tranquillimonas alkanivorans
NCBI taxonomy Id: 441119
Other names: DSM 19547, JCM 14836, T. alkanivorans, Tranquillimonas alkanivorans Harwati et al. 2008, alpha proteobacterium A34, strain A34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.