STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ11957.1Transcriptional regulator, TetR family. (225 aa)    
Predicted Functional Partners:
SFQ12003.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
     0.886
SFQ11981.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
     0.874
SFQ12052.1
Kynurenine formamidase.
 
     0.868
SFQ12030.1
TRAP transporter, DctM subunit.
 
     0.828
SFQ12076.1
Uncharacterized conserved protein, DUF849 family.
       0.752
SFQ09637.1
Right handed beta helix region.
  
     0.640
SFQ09815.1
Glycosyltransferase involved in cell wall bisynthesis.
  
     0.476
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.455
SFQ09772.1
O-antigen ligase.
  
     0.447
SFP42609.1
Signal transduction histidine kinase.
    
 
 0.405
Your Current Organism:
Tranquillimonas alkanivorans
NCBI taxonomy Id: 441119
Other names: DSM 19547, JCM 14836, T. alkanivorans, Tranquillimonas alkanivorans Harwati et al. 2008, alpha proteobacterium A34, strain A34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.